Browser by Variant
serial number
Sequence information
Region:Start-End
Length
P value
Position
Statistics
Virus Barcode
Other Information
Nucleotide Composition(%)
T(U)
C
A
G
AU
GC
T-1
C-1
A-1
32.1
18.3
29.9
19.6
62.0
38.0
36.0
15.9
28.5
G-1
T-2
C-2
A-2
G-2
T-3
C-3
A-3
G-3
19.5
26.1
18.4
30.8
24.6
34.4
20.7
30.2
14.7
(Describe the percentage of each base, and the frequency with which each base is used at the first, second, and third codon positions)
Nucleotide Pairwise Frequencies
ii
si
sv
R
29611
22
9
2.6
Polymorphic Sites
MEGA version7
CpG islands
Conserved sites
Variable sites
Parsimony informative sites
Singleton sites
9694
29530
291
108
183
Launch DnaSP6
Total number of sequences
Total number of sites
Invariable (monomorphic) sites
Variable (polymorphic) sites
52
28874
28650
224
Singleton sites
Parsimony
informative
sites
Two variants
Three variants
Four variants
Two variants
Three variants
Four variants
123
0
0
98
3
0
(The results of Polymorphic Sites are calculated in two ways)
Gene flow
Hd
The weighted values on Phylogenetic trees
π(Nucleotide diversity with JC, PiJC)
The weighted values on Phylogenetic trees
0.99095
\
0.00087
\
Hd
π
θ
0.99800
0.00094
0.00174
(Gene flow: The dispersal of individual organisms from their origin, resulting in the exchange of genes between different populations.)
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