DNA Barcode Processor

Recallrate package

RecallRate is a Python package for bioinformatics data analysis, designed to assist users in calculating the recall rate of DNA barcode sequences in relation to species sequences.

1.Prepare the document for reference

2.Help document

Installation

pip install recallrate

Importing the Package

from recallrate.main_module import process_files

Use the recallrate package

# Set file paths

barcode_file_path = 'path/to/your/barcodes.txt'

species_folder_path = 'path/to/your/species_sequences'

output_excel_path = 'path/to/your/output.xlsx'

# Call the function to process files and generate an Excel report

process_files(barcode_file_path, species_folder_path, output_excel_path)

For more information, please refer to the GitHub issues page.

The specificity package is designed to calculate the specificity of barcode sequences against a set of species sequences. It provides tools for reading sequences from a file, calculating the average nucleotide specificity, and exporting the results to an Excel file.